pAcFRS.2.t1

RS/tRNA Foundational Publication Support

Amiram, Miriam, Adrian D. Haimovich, Chenguang Fan, Yane-Shih Wang, Hans-Rudolf Aerni, Ioanna Ntai, Daniel W. Moonan, et al. 2015. ā€œEvolution of Translation Machinery in Recoded Bacteria Enables Multi-Site Incorporation of Nonstandard Amino Acidsā€. Nature Biotechnology 33: 1272-79. doi:10.1038/nbt.3372.

Wang, Lei, Zhiwen Zhang, Ansgar Brock, and Peter G Schultz. (2003) 2003. ā€œAddition of the Keto Functional Group to the Genetic Code of Escherichia Coliā€. Proceedings of the National Academy of Sciences of the United States of America 100 (1): 56-61.

Young, Travis S, Insha Ahmad, Jun A Yin, and Peter G Schultz. (2010) 2010. ā€œAn Enhanced System for Unnatural Amino Acid Mutagenesis in E. Coliā€. Journal of Molecular Biology 395 (2): 361-74. doi:10.1016/j.jmb.2009.10.030.

Young, Douglas D, Travis S Young, Michael Jahnz, Insha Ahmad, Glen Spraggon, and Peter G Schultz. (2011) 2011. ā€œAn Evolved Aminoacyl-TRNA Synthetase With Atypical Polysubstrate Specificityā€. Biochemistry 50 (11): 1894-900. doi:10.1021/bi101929e.

RS/tRNA Usage Publications

Arsiwala, Ammar, Chad Varner, Jessica N McCaffery, Andrew Kell, Geetanjali Pendyala, Ana Castro, Vivek Hariharan, Alberto Moreno, and Ravi S Kane. (2019) 2019. ā€œNanopatterning Protein Antigens to Refocus the Immune Responseā€. Nanoscale 11 (32): 15307-11. doi:10.1039/c9nr05145g.

Castro, Ana, Juan Manuel CarreƱo, James Duehr, Florian Krammer, and Ravi S. Kane. 2021. ā€œRefocusing the Immune Response to Selected Epitopes on a Zika Virus Protein Antigen by Nanopatterningā€. Advanced Healthcare Materials 10: e2002140. doi:10.1002/adhm.202002140.

RS/tRNA Pair Development Year
2015

ncAA(s) Incorporated

p-acetyl-L-phenylalanine

ncAA Structure (png, jpg, jpeg)
 p-acetyl-l-phenylalanine
ncAA Utility
Site-directed spin labeling, electron paramagnetic resonance

p-iodo-L-phenylalanine

ncAA Structure (png, jpg, jpeg)
p-Iodo-L-phenylalanine
ncAA Utility
Can be used for phasing in protein crystallography.


RS Organism of Origin
Parent RS
RS Mutations
Y32L
L65V
D158G
I159C
L162R
A167D
R257G

tRNA Organism of Origin
Parent tRNA
tRNA Anticodon
CUA
Other tRNA Mutations
C17A
U17aG
U20C
G37A
U47G

RS/tRNA Availability
Addgene Plasmid #73544
Used in what cell line?

RS/tRNA Additional Notes
This RS/tRNA pair was evolved in the C321.A E. coli strain from the AcetylPhe RS (pAcF-RS) originally reported in in 2002 foundational paper, used as a model RS in the 2010 foundational paper and characterized for permissivity in the 2011 foundational paper. In 2015 further residues were allowed to evolve to optimize p-acetyl-Phe and tRNA interactions and improve expression of multiple ncAA containing proteins using low RS levels. This RS showed a 15-fold increased expression of GFP(3UAG) compared to pAcFRS using a chromosome incorporated RS. Figure 4a of foundational paper shows that when included as multicopy plasmid it still highly outperforms the starting RS for incorporating 30 ncAAs into a single protein construct, but does not outperform the original unevolved RS when expressing GFP with 3 ncAAs, and it also has a lower fidelity (higher protein production in the absence of ncAA). This RS was also shown to be highly promiscuous, incorporating Phe variants pAcetyl, pIodo, pBromo, pChloro, pMethyl, ptrifluoromethyl along with methylTyr, 2-napthylAla and styrylAla. Was selected to discrimate against pAzf and did when chromosome incorporated, but not when provided as a multicopy plasmid. Also especially effective at incorporating O-methyl-Tyr, p-IodoPhe, p-trifluormethylPhe, p-tert-butyl-Phe, O-tert-Butyl and p-phenylPhe.